The collection of the Herpetological Museum of the University of Antioquia (northwestern Colombia)

Carlos Ortiz-Yusty; Juan Daza; Vivian Paez; Brian Bock

doi:10.3897/BDJ.3.e1325

Biodiversity Data Journal : Data paper

Data paper

The collection of the Herpetological Museum of the University of Antioquia (northwestern Colombia)

Carlos E. Ortiz-Yusty^†, Juan M. Daza^†, Vivian P. Paez^†, Brian C Bock^†

† Grupo Herpetológico de Antioquia, Instituto de Biología, Universidad de Antioquia, Calle 67 # 53–108, Bloque 7–121, AA 1226, Medellín, Colombia

Corresponding author: Juan M. Daza ([email protected])

Academic editor: Diogo Provete

Received: 12 Aug 2014 | Accepted: 23 Jan 2015 | Published: 05 Feb 2015

© 2015 Carlos E. Ortiz-Yusty, Juan M. Daza, Vivian P. Paez, Brian C Bock.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0) which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Citation: Ortiz-Yusty C, Daza J, Paez V, Bock B (2015) The collection of the Herpetological Museum of the University of Antioquia (northwestern Colombia). Biodiversity Data Journal 3: e1325. doi: 10.3897/BDJ.3.e1325

Abstract

Northwestern South America harbors one of the richest herpetofauna in the world. The connection among several biogeographic provinces along with climatic and orographic complexity makes this region an important contributor to the Neotropical biodiversity. Despite of this importance, the amphibian and reptile fauna in this area remains largely unknown as few herpetological collections has been made in recent decades. Motivated by this, the Herpetological Museum at the Universidad de Antioquia (Medellín, Colombia) has been increasing the collection in the last 16 years to better understand the herpetofaunal diversity and thus contribute to ecological, systematic, biogeographic and conservation research in the Neotropics. Here, we present the results of this effort and highlight how future collection will impact our understanding of the Neotropical herpetofauna.

Keywords

Antioquia, tropical andes, neotropical, herpetology.

Introduction

The Herpetological Museum of the Universidad of Antioquia (in Spanish: Museo de Herpetología Universidad de Antioquia - MHUA) was created in 1998 with the main goal to generate, perpetuate, organize and provide information and data of amphibian and reptile faunas focusing mostly in northwestern Colombia in the Department of Antioquia and the northern Andes. The 13,343 specimens in the MHUA collection are mainly the result of the fieldwork and identifications of multiple researchers and students associated with the Biology Institute at the Universidad de Antioquia over the last sixteen years. Since its creation, the museum has been administered by the Antioquia Herpetological Group (in Spanish: Grupo Herpetológico de Antioquia - GHA, http://herpetologicodeantioquia.org/) and is currently directed by professors: Vivian P. Páez, Brian C. Bock and Juan M. Daza. Significant contributions to the growth, maintenance and optimal operation of the MHUA collection have also been made by past and current researchers: John J. Estrada, Juan M. Daza, Juan P. Hurtado, Esteban Alzate, Mauricio Rivera, Juan C. Arredondo, Eliana Muñoz, Lina Hinestroza, and Paul D. Gutiérrez-Cárdenas.

During the short history of the GHA and the MHUA, this collection has been a fundamental initiative, where specimens have been collected during research conducted by professors, biologists, and undergraduate and graduate students. It also has been essential for providing reference material for other studies conducted by the GHA research Lab and by other researchers from other national and international institutions. Of the current 13,343 specimens deposited in the MHUA collection, 8,195 are amphibians representing 230 identified species (~29.9% of the species in Colombia) and 5,148 are reptiles representing 223 identified species (~37% of the species in Colombia). Catalog numbers for amphibians range from MHUA A-0001 to MHUA A-8195 and for reptiles from MHUA R-10000 to MHUA R-18540. Specimens data are stored in a digital database including in some cases calls and pictures of the living specimen. Additionally, the museum houses seven holotypes and 142 paratypes of 11 species Table 1) and 240 tadpole lots preserved in formaldehyde and their data recorded on paper (Currently not included in the online database).

Table 1. Download as CSV

Holotypes and Paratypes conserved in the MHUA Herpetological Collection

Holotypes	Catalog Number	Reference
Dendropsophus norandinus	MHUA-A 3781	Rivera-Correa and Gutiérrez-Cárdenas 2012
Dendropsophus manonegra	MHUA-A 7336	Rivera-Correa and Orrico 2013
Atelopus nocturnus	MHUA-A 5280	Bravo-Valencia and Rivera-Correa 2011
Agalychnis terranova	MHUA-A 7316	Rivera-Correa 2013
Hyloscirtus antioquia	MHUA-A 7227	Rivera-Correa and Faivovich 2013
Anadia antioquensis	MHUA-R 10537	Arredondo 2013
Anolis anoriensis	MHUA-R 11719	Velasco et al. 2010
Pristimantis jaguensis	MHUA-A 7239	Rivera-Prieto et al. 2014
Paratypes
Pristimantis batrachites	MHUA-A 1574-1604, 1775-1780, 2023	Lynch 2003
Dendropsophus norandinus	MHUA-A 3768-3780, 3782-3790, 4092, 5274	Rivera-Correa and Gutiérrez-Cárdenas 2012
Dendropsophus manonegra	MHUA-A 7337, 7668	Rivera-Correa and Orrico 2013
Atelopus nocturnus	MHUA-A 2472, 5279, 5281-5286	Bravo-Valencia and Rivera-Correa 2011
Agalychnis terranova	MHUA-A 7317-7320	Rivera-Correa 2013
Hyloscirtus antioquia	MHUA-A 1707-1709, 1716, 2645-2647, 4140, 5708-5708, 6012, 6014, 6138-6139, 7228-7232, 7449-7453, 7568	Rivera-Correa and Faivovich 2013
Allobates niputidea	MHUA-A 1830, 1831, 2070, 2072, 2147-2151, 2515	Grant et al. 2007
Anadia antioquensis	MHUA-R 11254	Arredondo 2013
Anolis anoriensis	MHUA-R 11263, 11284, 11720-11728	Velasco et al. 2010
Atractus paisa	MHUA-R 14222, 14226, 14235-14254, 14261, 14274	Passos et al. 2009
Pristimantis jaguensis	MHUA-A 7240, 7241, 7247-7257	Rivera-Prieto et al. 2014

Sampling methods

Study extent:

The MHUA is a regional museum covering mostly the northwestern region of Colombia (Fig. 1). Department of Antioquia with an area of 63,326.5 km² is the most significant political division represented in the MHUA collection with 1,033 sampling localities and 8,544 specimens. Collection effort per locality varies from 1 up to 318 specimens.

Figure 1.

Geographic distributions of specimens deposited in MHUA collection. A: All specimens, Amphibian and Reptiles; B: Amphibians and C: Reptiles collected within Antioquia Province.

Sampling description:

Specimens deposited in the MHUA are the result of multiple research projects, teaching activities, and donations. As a consequence, no general, single or uniform protocol has been followed to collect and prepare specimens. For example, collections procedures of donated specimens are largely unknown as most of the specimens were found fortuitously. In contrast, specimens from research projects and teaching activities share similar sampling and preparation protocols. Depending on the research goal, capture methods include Visual Encounter Surveys (VES), sampling plots, linear transects, and pitfall traps according to Angulo et al. (2006). All specimens are preserved in wet, alcohol for adults and formaldehyde for tadpoles.

Quality control:

Before a specimen is deposited in the collection, the museum curatorial staff revises the associated information to the specimen, i.e., locality, coordinates, taxonomy. The minimum information required to include a specimen in the collection is the one needed to publish the data in GBIF. Scientific names follow two standarized taxonomic nomenclatures. For amphibians we follow Frost (2014) and reptile taxonomy follows Uetz (2010).

Geographic coverage

Description:

The 13,343 specimens deposited in MHUA collection came mainly from the Andean region of northwestern Colombia (Fig. 1 - A). Specimens have been collected from 1524 localities (953 for amphibians and 762 for reptiles), and the maximum number of amphibians (72.7% - 5959 specimens) and reptiles (53.1% - 2757 specimens) has been collected within province of Antioquia (1033 localities) (Fig. 1 - B:C). Antioquia has an area of 62 150 km2, which extends from the Atrato River on the west to the Magdalena River on the east, with a coastline of 240 km on the Gulf of Urabá on the Caribbean coast and two parallel mountain ranges (Cordillera Occidental and Cordillera Oriental) that bisect the department, attaining elevations up to 4 000 m.

MHUA contains specimens from 26 provinces within Colombia: Amazonas, Antioquia, Atlantico, Atlántico, Bolivar, Bolívar, Boyaca, Boyacá, Caldas, Caquetá, Cauca, Cesar, Choco, Chocó, Cordoba, Córdoba, Cundinamarca, Guajira, La Guajira, Loreto, Magdalena, Meta, Nariño, Norte de Santander, Quindío, Risaralda, San Andres y Providencia, Santander, Sucre, Tolima, Valle del Cauca, Vaupes and Vichada (Fig. 1). The biomes better represented in MHUA corresponds to Magdalena Valley montane forests with 6533 specimens (4749 amphibians and 1784 reptiles) and Magdalena-Urabá moist forests with 3029 specimens (1179 amphibians and 1850 reptiles; Fig. 2). Altitudinally, specimens in MHUA represents since sea level up to 4000 m. a. s., however, the majority of collections have been made in low and mid lands (below 2000 m a. s.; Fig. 3).

Figure 2.

Biomes represented in MHUA collection (Suppl. material 1).

Figure 3.

Altitudinal distribution of specimens in MHUA collections (Suppl. material 2).

Coordinates:

4°20'9.6''S and 11°3'18''N Latitude; 78°12'0''W and 67°29'20.4''W Longitude.

Taxonomic coverage

Description:

Kingdom: Animalia

Phylum: Chordata

Classes: Amphibia, Reptilia

Orders: Anura, Caudata, Gymnophiona, Crocodylia, Sauria, Serpentes, Squamata, Testudines

Taxa included:

Rank	Scientific Name	Common Name
kingdom	Animalia	Animals
subkingdom	Eumetazoa
phylum	Chordata
subphylum	Vertebrata
class	Amphibia	Amphibians
class	Reptilia	Reptiles
order	Crocodylia
order	Sauria
order	Serpentes
order	Squamata
order	Testudines
order	Anura
order	Caudata
order	Gymnophiona
family	Aromobatidae
family	Brachycephalidae
family	Bufonidae
family	Caeciliidae
family	Centrolenidae
family	Ceratophryidae
family	Craugastoridae
family	Dendrobatidae
family	Eleutherodactylidae
family	Hemiphractidae
family	Hylidae
family	Leiuperidae
family	Leptodactylidae
family	Microhylidae
family	Plethodontidae
family	Ranidae
family	Strabomantidae
family	Plethodontidae
family	Caeciliidae
family	Rhinatrematidae
family	Alligatoridae
family	Amphisbaenidae
family	Anguidae
family	Corytophanidae
family	Dactyloidae
family	Gekkonidae
family	Gymnophthalmidae
family	Hoplocercidae
family	Iguanidae
family	Phyllodactylidae
family	Polychrotidae
family	Scincidae
family	Sphaerodactylidae
family	Teiidae
family	Tropiduridae
family	Anomalepididae
family	Boidae
family	Colubridae
family	Dipsadidae
family	Elapidae
family	Leptotyphlopidae
family	Tropidophiidae
family	Typhlopidae
family	Viperidae
family	Colubridae
family	Dactyloidae
family	Dipsadidae
family	Gekkonidae
family	Gymnophthalmidae
family	Iguanidae
family	Scincidae
family	Sphaerodactylidae
family	Teiidae
family	Viperidae
family	Chelonidae
family	Chelydridae
family	Dermochelidae
family	Emydidae
family	Geoemydidae
family	Kinosternidae
family	Podocnemididae

Temporal coverage

Notes:

The MHUA data cover specimens collected from 1971 to 2013. Specimens collected before 1998, when the museum was founded, are mostly donations and sampling efforts of independent researchers. Most specimens have entered the collection after the year 2000 thanks to research projects in our laboratory and teaching activities (Fig. 4).

Collection data

Collection name:

Museo de Herpetología Universidad de Antioquia

Collection identifier:

MHUA

Specimen preservation method:

Ethanol 70%

Usage rights

Use license:

Creative Commons CCZero

Data resources

Data package title:

Museo de Herpetología Universidad de Antioquia

Number of data sets:

Data set name:

Colección de anfibios - Museo de Herpetología de la Universidad de Antioquia

Character set:

UTF-8

Download URL:

http://www.gbif.org/dataset/cc28549b-467f-448c-875e-881ca507aba8

Data format:

Darwin Core Archive

Data format version:

1.0

Column label	Column description
occurrenceID	A unique identifier for the record within the data set or collection.
type	The nature or genre of the resource
language	A language of the resource
institutionID	An identifier for the collection or dataset from which the record was derived
institutionCode	The name (or acronym) in use by the institution having custody of the object(s) or information referred to in the record
collectionCode	The name, acronym, coden, or initialism identifying the collection or data set from which the record was derived
basisOfRecord	The specific nature of the data record
catalogNumber	An identifier for the record within the data set
recordedBy	A list of names of people, groups, or organizations responsible for recording the original Occurrence
preparations	A list of preparations and preservation methods for a specimen
eventDate	The date-time (year) during which an collection occurred
fieldNumber	An identifier given to the event in the field
continent	The name of the continent in which the Location occurs
country	The name of the country or major administrative unit in which the Location occurs
countryCode	The standard code for the country in which the Location occurs
stateProvince	The name of the next smaller administrative region than country in which the Location occurs
county	The full, unabbreviated name of the next smaller administrative region than stateProvince in which the Location occurs
locality	The specific description of the place. Less specific geographic information can be provided in other geographic terms
minimumElevationInMeters	The lower limit of the range of elevation (altitude, above sea level), in meters
maximumElevationInMeters	The upper limit of the range of elevation (altitude, above sea level), in meters
decimalLatitude	The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic center of a Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive
decimalLongitude	The geographic longitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic center of a Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive
geodeticDatum	The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based
georeferenceRemarks	Notes or comments about the spatial description determination, explaining assumptions made in addition or opposition to the those formalized in the method referred to in georeferenceProtocol
identificationQualifier	A brief phrase or a standard term ("cf.", "aff.") to express the determiner's doubts about the Identification
scientificName	The full scientific name, with authorship and date information if known
kingdom	The full scientific name of the kingdom in which the taxon is classified
phylum	The full scientific name of the phylum or division in which the taxon is classified
class	The full scientific name of the class in which the taxon is classified
order	The full scientific name of the order in which the taxon is classified
family	The full scientific name of the family in which the taxon is classified
genus	The full scientific name of the genus in which the taxon is classified
specificEpithet	The name of the first or species epithet of the scientificName
taxonRank	The taxonomic rank of the most specific name in the scientificName
collectionID	An identifier for the institution having custody of the object(s) or information referred to in the record

Data set name:

Colección de reptiles - Museo de Herpetología de la Universidad de Antioquia

Character set:

UTF-8

Download URL:

http://www.gbif.org/dataset/d3ba75d5-1382-440f-8f79-c45d8e3e69be

Data format:

Darwin Core Archive

Data format version:

1.0

Column label	Column description
occurrenceID	A unique identifier for the record within the data set or collection
type	The nature or genre of the resource
language	A language of the resource
institutionID	An identifier for the collection or dataset from which the record was derived
institutionCode	The name (or acronym) in use by the institution having custody of the object(s) or information referred to in the record
collectionCode	The name, acronym, coden, or initialism identifying the collection or data set from which the record was derived
basisOfRecord	The specific nature of the data record
catalogNumber	An identifier for the record within the data set
recordedBy	A list of names of people, groups, or organizations responsible for recording the original Occurrence
preparations	A list of preparations and preservation methods for a specimen
eventDate	The date-time (year) during which an collection occurred
fieldNumber	An identifier given to the event in the field
continent	The name of the continent in which the Location occurs
country	The name of the country or major administrative unit in which the Location occurs
countryCode	The standard code for the country in which the Location occurs
stateProvince	The name of the next smaller administrative region than country in which the Location occurs
county	The full, unabbreviated name of the next smaller administrative region than stateProvince in which the Location occurs
locality	The specific description of the place. Less specific geographic information can be provided in other geographic terms
minimumElevationInMeters	The lower limit of the range of elevation (altitude, above sea level), in meters
maximumElevationInMeters	The upper limit of the range of elevation (altitude, above sea level), in meters
decimalLatitude	The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic center of a Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive
decimalLongitude	The geographic longitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic center of a Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive
geodeticDatum	The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based
georeferenceRemarks	Notes or comments about the spatial description determination, explaining assumptions made in addition or opposition to the those formalized in the method referred to in georeferenceProtocol
identificationQualifier	A brief phrase or a standard term ("cf.", "aff.") to express the determiner's doubts about the Identification
scientificName	The full scientific name, with authorship and date information if known
kingdom	The full scientific name of the kingdom in which the taxon is classified
phylum	The full scientific name of the phylum or division in which the taxon is classified
class	The full scientific name of the class in which the taxon is classified
order	The full scientific name of the order in which the taxon is classified
family	The full scientific name of the family in which the taxon is classified
genus	The full scientific name of the genus in which the taxon is classified
specificEpithet	The name of the first or species epithet of the scientificName
taxonRank	The taxonomic rank of the most specific name in the scientificName
collectionID	An identifier for the institution having custody of the object(s) or information referred to in the record

Figure 4.

Temporal distribution of the specimen records in the MHUA collections (Suppl. material 3).

Acknowledgements

We thank the University of Antioquia for the infrastructure. Several other institutions have funded the increase of the specimen collection: Corantioquia, Isagen, Instituto Alexander von Humboldt. Ministerio del Medio Ambiente have granted collecting permits. The Nature Conservancy and Conservation International funded catalog digitalization. During all these years, undergraduate and graduate students have been fundamental to the maintance of the collection. We finally thank Diogo Provete and Edgar Lehr who provided very helpful and insightful comments on the manuscript.

Author contributions

Conceived and designed the manuscript: CEOY, JMD. Analyzed the data: CEOY, JMD. Contributed to the writing of the manuscript: CEOY, JMD, VPP, BCB.

References

Angulo A, Rueda-Almonacid JV, Rodríguez-Mahecha JV, Enrique LM (2006) Técnicas de inventario y monitoreo para los anfibios de la región tropical andina. Bogotá, DC, 299 pp. [ISBN 9589769055]

Arredondo JC (2013) A new species of gymnophthalmid lizard of the genus Anadia (Gymnophthalmidae: Cercosaurinae) from Northern Andes of Colombia. Amphibia-Reptilia 34: 173‑184. DOI: 10.1163/15685381-00002880

Bravo-Valencia L, Rivera-Correa M (2011) A new species of harlequin frog (Bufonidae: Atelopus) with an unusual behavior from Andes of Colombia. Zootaxa 3045: 57‑67.

Frost DR (2014) Amphibian species of the world: an online reference. Version 6.0 (February 2014): 1. URL: http://research.amnh.org/vz/herpetology/amphibia/

Grant T, Acosta A, Rada M (2007) A name for the species of Allobates (Anura: Dendrobatoidea: Aromobatidae) from the Magdalena Valley of Colombia. Copeia 2007: 844‑854. DOI: 10.1643/0045-8511(2007)7[844:ANFTSO]2.0.CO;2

Lynch JD (2003) New species of frogs (Eleutherodactylus: Leptodactylidae) from the Cordillera Oriental of Norte de Santander and Santander, Colombia. Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales 27: 449‑460.

Passos P, Arredondo J, Fernandes R, Lynch J (2009) Three New Atractus (Serpentes: Dipsadidae) from the Andes of Colombia. Copeia 2009: 425‑436. DOI: 10.1643/CH-08-063

Rivera-Correa M (2013) A new red-eyed treefrog of Agalychnis (Anura: Hylidae: Phyllomedusinae) from middle Magdalena River valley of Colombia with comments on its phylogenetic position. Zootaxa 3636: 85‑100. DOI: 10.11646/zootaxa.3636.1.4

Rivera-Correa M, Faivovich J (2013) A new species of Hyloscirtus (Anura: Hylidae) from Colombia, with a rediagnosis of Hyloscirtus larinopygion (Duellman, 1973). Zootaxa 69: 298‑313.

Rivera-Correa M, Gutiérrez-Cárdenas PDA (2012) A new highland species of treefrog of the Dendropsophus columbianus group (Anura: Hylidae) from the Andes of Colombia. Zootaxa 3486: 50‑62.

Rivera-Correa M, Orrico VGD (2013) Description and phylogenetic relationships of a new species of treefrog of the Dendropsophus leucophyllatus group (Anura: Hylidae) from the Amazon basin of Colombia and with an exceptional color pattern. Zootaxa 3686: 447‑460. DOI: 10.11646/zootaxa.3686.4.3

Rivera-Prieto DA, Rivera-Correa M, Daza JM (2014) A new colorful species of Pristimantis (Anura: Craugastoridae) from the eastern flank of the Cordillera Central in Colombia. Zootaxa 3900 (2): 223‑242. DOI: 10.11646/zootaxa.3900.2.3

Uetz P (2010) The original descriptions of reptiles. Zootaxa 2334: 59‑68.

Velasco J, Gutiérrez-Cárdenas P, Quintero-Angel A (2010) A new species of Anolis of the aequatorialis group (Squamata: Iguania) from the central Andes of Colombia. The Herpetological Journal 20: 231‑236.

Supplementary materials

Suppl. material 1: Biomes represented in MHUA collection

Authors: Carlos Ortiz-Yusty

Data type: Microsoft Excel file

Filename: supp 1_ Biomes_represented.xlsx
Download file (8.97 kb)

Suppl. material 2: Altitudinal distribution of specimens in MHUA.

Authors: Carlos Ortiz-Yusty

Data type: Microsoft Excel file

Filename: supp_2_Altitudinal distribution.xlsx
Download file (8.11 kb)

Suppl. material 3: Temporal distribution of the specimen records in the MHUA collections

Authors: Carlos Ortiz-Yusty

Data type: Microsoft Excel file

Filename: supp_3_Temporal distribution.xlsx
Download file (8.86 kb)